Bolsonaro has been arrested after authorities concluded he posed a concrete flight risk while under domestic detention.
The ex-president was convicted of planning a armed takeover in the ninth month and sentenced more than a 27-year term in jail, but he continued under house arrest pending legal challenges.
Brazilian Supreme Court Justice the presiding justice said the move to detain the elderly politician was a safety action after fresh information emerged.
This involved trying to remove his tracking device and a invitation to a demonstration that could "allow for a chance to flee".
In a filing authorising the custody, Justice Moraes said information from the centre monitoring the former president's confinement suggested the one-time head of state's aim to disable the tracking monitor to secure accomplishment in his flight.
This, it said, would be assisted by the chaos caused by the gathering called by his son.
His child, his son Flávio, who works as a senator, called for a assembly of his supporters near the former president's residence to take place on Saturday evening.
The senator wrote on digital networks on Friday: Will you battle for your homeland, or see it all from your mobile device there on your couch? I call on you to fight with us."
He said the vigil would be so followers could offer prayers for his well-being and for the reestablishment of democratic governance in our country."
Part of Justice Moraes's decision was the potential of his transfer to foreign missions near the residence, considering that the probes revealed a history of arranging to request asylum through a diplomatic representation", a statement said.
The legal document emphasizes that the American diplomatic mission in the capital, the capital city, is situated around 8 miles from the former president's residence.
The former president's legal troubles have drawn the ire of fellow populist conservative United States President President Trump, prompting him to enact a half-rate duty on goods coming from Brazil.
He is being kept in a national police facility in Brazil's capital city and will experience a custody hearing on the following day.
It was only on Friday that the ex-leader's attorneys asked the High Court to authorize him to fulfill his full incarceration period under domestic detention, with tracking devices.
They also requested that the former president be permitted to exit his dwelling for medical treatment, saying he demanded regular treatment for pulmonary infections and other ailments.
The former president was determined responsible of orchestrating a scheme aimed at keeping him in power after he was defeated in the presidential race to his ideological adversary, Luiz Inácio Lula da Silva.
Supreme Court justices said that he knew of a scheme which involved plans to murder the current president and his VP candidate, his vice-presidential candidate, and to arrest and execute Justice Moraes - the top judicial official who has been presiding over his judicial proceedings.
The plot was stopped because it couldn't obtain the backing of the military leaders. His successor was sworn in without issue on January 1st, 2023.
But a week later, on the eighth of January, many Bolsonaro supporters invaded and destroyed official structures in the capital, the capital city.
The law enforcement took action and around approximately 1,500 persons were arrested.
The justices found that the protesters had been incited by Bolsonaro whose plan, they said, was for the Brazilian military to intervene, restore order and reinstate his authority.
At the time, his attorneys called the decades-long sentence unreasonably severe".
He was also prohibited from campaigning for office until 2060 - eight years after the conclusion of his imprisonment.
The former president called the court case a "witch hunt and said it was designed to prevent him competing in the next presidential race.
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